The central nervous system is arguably our most complex and least understood organ. Billions of neurons and glia are organized into elaborate neural circuits thereby forming the structural basis for learning, memory and complex behavior. Our laboratory uses transgenic mouse models and human pluripotent stem cell-derived models of brain development to unravel the molecular and cell biological mechanisms underlying human brain development and stem cell-dependent plasticity in the adult brain.
Adult neurogenesis
Learning and adjusting behavior to new situations is a crucial ability to master our daily life. Our brain enables us to do so because it is remarkably plastic: Synaptic connections can be adjusted in response to environmental cues throughout life. Even entire neurons can be added to already existing circuits in the adult brain. This extraordinary form of brain plasticity – adult neurogenesis – takes place in specialized niches of the brain, which harbor a unique environment suited to form new neurons from resident stem cells. Adult neurogenesis serves important functions in memory formation, e.g. in spatial orientation, but needs to be tightly controlled. Aging or diseases like epilepsy and Alzheimer’s disease can increase or decrease the rate of adult neurogenesis with consequences on memory formation. Therefore, a main focus of our research is to study molecular mechanisms that control adult neurogenesis. We use transgenic mouse models and primary cell culture systems to investigate how transcription factors, cell metabolism, signaling molecules or environmental stimuli (e.g. exercise or stress) regulate the generation of adult-born neurons from stem cells and their differentiation into mature neurons.

Birth-dated neurons and astrocytes (magenta) and neural stem cells (green) in mouse hippocampus.

Mitotic spindle in a mouse neural stem/precursor cell.

Electronmicroscope image of cultured mouse neural stem/precursor cells.
- Adult neurogenesis: New neurons, new opportunities. Doludda B, Barde W, D’Egidio F, Fitzsimons CP, Frisén J, Gage FH, Jessberger S, Lazarov O, Lie DC, Lucassen PJ, de Lucia C, Salta E, Song H, Song J, Thuret S, Toda T, Kempermann G.Cell Stem Cell. 2026 Mar 5;33(3):382-392. doi: 10.1016/j.stem.2026.01.014.
- The neuronal fate determinants SOX4/11 control mitotic fidelity of adult hippocampal precursor cells. Sneha Adhikarla, Iris Schäffner, Angélica Luna Leal, Shailendra Kumar Singh, Benjamin Martin Häberle, Sören Turan, Elizabeth Sock, Andreas Sagner, Dieter Chichung Lie. bioRxiv 2025.10.13.682016; doi: https://doi.org/10.1101/2025.10.13.682016
- Analysis of β-Catenin Signalling Activity Suggests Differential Regulation of Ontogenetically Distinct Dentate Granule Neuron Populations. Billmann C, Schäffner I, Heppt J, Lie DC.Int J Dev Neurosci. 2025 Feb;85(1):e70009. doi: 10.1002/jdn.70009.
- Differential vulnerability of adult neurogenic niches to dosage of the neurodevelopmental-disorder linked gene Foxg1. Schäffner I, Wittmann MT, Vogel T, Lie DC.Mol Psychiatry. 2023 Jan;28(1):497-514. doi: 10.1038/s41380-022-01497-8.
- Enriched environment ameliorates adult hippocampal neurogenesis deficits in Tcf4 haploinsufficient mice. Braun K, Häberle BM, Wittmann MT, Lie DC.BMC Neurosci. 2020 Nov 23;21(1):50. doi: 10.1186/s12868-020-00602-3.
- β-catenin signaling modulates the tempo of dendritic growth of adult-born hippocampal neurons. Heppt J, Wittmann MT, Schäffner I, Billmann C, Zhang J, Vogt-Weisenhorn D, Prakash N, Wurst W, Taketo MM, Lie DC.EMBO J. 2020 Nov 2;39(21):e104472. doi: 10.15252/embj.202010447
- FoxO Function Is Essential for Maintenance of Autophagic Flux and Neuronal Morphogenesis in Adult Neurogenesis. Schäffner I, Minakaki G, Khan MA, Balta EA, Schlötzer-Schrehardt U, Schwarz TJ, Beckervordersandforth R, Winner B, Webb AE, DePinho RA, Paik J, Wurst W, Klucken J, Lie DC.Neuron. 2018 Sep 19;99(6):1188-1203.e6. doi: 10.1016/j.neuron.2018.08.017.
- Role of Mitochondrial Metabolism in the Control of Early Lineage Progression and Aging Phenotypes in Adult Hippocampal Neurogenesis. Beckervordersandforth R, Ebert B, Schäffner I, Moss J, Fiebig C, Shin J, Moore DL, Ghosh L, Trinchero MF, Stockburger C, Friedland K, Steib K, von Wittgenstein J, Keiner S, Redecker C, Hölter SM, Xiang W, Wurst W, Jagasia R, Schinder AF, Ming GL, Toni N, Jessberger S, Song H, Lie DC.Neuron. 2017 Feb 8;93(3):560-573.e6. doi: 10.1016/j.neuron.2016.12.017.
Genetic causes of neurodevelopmental diseases
Brain development is a highly complex process during which more than 16 billion neurons need to be generated at exactly the right time, place and number. During maturation, this vast number of neurons forms more than 1014 synapses to set up functioning neuronal circuits. It is not surprising that mutations in neurodevelopmental genes can disrupt this complicated process at any time in development. As a consequence, patients carrying such mutations often suffer from intellectual disability or an increased susceptibility to neuropsychiatric diseases. The underlying molecular mechanisms are, however, poorly understood. We use animal and stem cell-based human models to study the effects of mutated, dysfunctional neurodevelopmental genes on the major steps in neurodevelopment – like the generation of neural progenitors from stem cells and their differentiation into mature neurons.

Neural precursor cells (magenta) and neurons (green) in a human cortical brain organoid.

Single cell sequencing of E18.5 neocortices from control and Tcf4 knockout mice.

Neurites of neurons generated from human embryonic stem cells.
- A novel human organoid model system reveals requirement of TCF4 for oligodendroglial differentiation. Furlanetto F, Flegel N, Kremp M, Spear C, Fröb F, Alfonsetti M, Bohl B, Krumbiegel M, Turan S, Reis A, Lie DC, Winkler J, Falk S, Wegner M, Karow M. Life Sci Alliance. 2025 Mar 28;8(6):e202403102. doi: 10.26508/lsa.202403102.
- CRISPR/Cas9-mediated generation of hESC lines with homozygote and heterozygote p.R331W mutation in CTBP1 to model HADDTS syndrome. Akdaş EY, Turan S, Guhathakurta D, Ekici A, Salar S, Lie DC, Winner B, Fejtova A. Stem Cell Res. 2023 Mar;67:103012. doi: 10.1016/j.scr.2022.103012.
- scRNA sequencing uncovers a TCF4-dependent transcription factor network regulating commissure development in mouse. Wittmann MT, Katada S, Sock E, Kirchner P, Ekici AB, Wegner M, Nakashima K, Lie DC, Reis A.Development. 2021 Jul 15;148(14):dev196022. doi: 10.1242/dev.196022.
- A novel human stem cell model for Coffin-Siris syndrome-like syndrome reveals the importance of SOX11 dosage for neuronal differentiation and survival. Turan S, Boerstler T, Kavyanifar A, Loskarn S, Reis A, Winner B, Lie DC.Hum Mol Genet. 2019 Aug 1;28(15):2589-2599. doi: 10.1093/hmg/ddz089.
- Analysis of the expression pattern of the schizophrenia-risk and intellectual disability gene TCF4 in the developing and adult brain suggests a role in development and plasticity of cortical and hippocampal neurons. Jung M, Häberle BM, Tschaikowsky T, Wittmann MT, Balta EA, Stadler VC, Zweier C, Dörfler A, Gloeckner CJ, Lie DC.Mol Autism. 2018 Mar 22;9:20. doi: 10.1186/s13229-018-0200-1.